PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013267.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 454aa MW: 50427.7 Da PI: 6.5632

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013267.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.8e-10	167	206	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le+ L++ ++ Pbr013267.1 167 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQE 206 788*************************976666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-9	163	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.427	165	209	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-7	167	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-6	167	210	No hit	No description
CDD	cd14708	1.91E-23	167	218	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-7	168	211	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-30	252	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MQSFKAASTN PEFYSHSSFY FRFLSPLLTV FVLMAYENWV VGAGSMFSLK ANNVSVVPDG 60 LHYGALNVGG CLDIGSTITG TGGGGGCVDT GQQQPYMYQQ QKGTTSSGNG HFENWGDNSA 120 MADNSQQTDT STDVDTDDKN QLHGVQHGAL VVVDSMEQAK ERTGDQKTLR RLAQNREAAR 180 KSRLRKKAYV QQLENSRLRL SQLEQELQRA RQQGIFIANG LPGDYGHSVA GNGALTFDLE 240 YAHWLEEHQR LIHDMRSAVN CHMGDNELRI LVDSVMTHYD EIFRLKSIAA KTDVFHMLSG 300 MWQTPTERCF MWLGGFRSSE LLKILGNHLE PLTDQQLMGV CNLQQSSQQA EDALSQGMEA 360 LQQSLVETLS SANHCPTGSG NVADYMGQMA IAMGKLATLE NFLYQADLLR QQTLQQLHRI 420 LTTRQAARAL LVISDYFSRL RALSSLWQAR PRD*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MQSFKAASTN PEFYSHSSFY FRFLSPLLTV FVLMAYENWV VGAGSMFSLK ANNVSVVPDG  60
LHYGALNVGG CLDIGSTITG TGGGGGCVDT GQQQPYMYQQ QKGTTSSGNG HFENWGDNSA  120
MADNSQQTDT STDVDTDDKN QLHGVQHGAL VVVDSMEQAK ERTGDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLENSRLRL SQLEQELQRA RQQGIFIANG LPGDYGHSVA GNGALTFDLE  240
YAHWLEEHQR LIHDMRSAVN CHMGDNELRI LVDSVMTHYD EIFRLKSIAA KTDVFHMLSG  300
MWQTPTERCF MWLGGFRSSE LLKILGNHLE PLTDQQLMGV CNLQQSSQQA EDALSQGMEA  360
LQQSLVETLS SANHCPTGSG NVADYMGQMA IAMGKLATLE NFLYQADLLR QQTLQQLHRI  420
LTTRQAARAL LVISDYFSRL RALSSLWQAR PRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013267.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770021	0.0	KC770021.1 Pyrus pyrifolia microsatellite TXY53 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009356451.1	0.0	PREDICTED: transcription factor TGA2.3-like isoform X5
Swissprot	Q9SX27	1e-174	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A498HHC6	0.0	A0A498HHC6_MALDO; Uncharacterized protein
STRING	XP_009356415.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-147	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]