PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 27981.3 Da PI: 8.587 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00014 | 146 | 184 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YI+ Lq Pbr012051.1 146 RKEKLGERITALQQLVSPY-----GKTDTASVLHEAMGYIRFLQ 184 67788899999*****999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.115 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-8 | 145 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.07E-6 | 145 | 188 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-11 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAENGGFEGD HLAVTEGPGF SQLLFPADEV VNLAVDSDQT FNYTRPSTYP TQIKPPKILC 60 FGNYDQTHGN GVEIRFLETA KKSAAACSES SSVSSTGTAS INALPKSNNK RQRGSAPISS 120 TATPPIQRAA KRAKSENPTS AGNGKRKEKL GERITALQQL VSPYGKTDTA SVLHEAMGYI 180 RFLQEQVQVL CSPYLQRLPP LPVHGGEVNQ EGRRSELRSR GLCLVPMEYT THAGNSNGAD 240 FWSPAMANIY DVSSPSTKY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012051.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370127.1 | 0.0 | PREDICTED: transcription factor bHLH113-like | ||||
TrEMBL | A0A498J0U0 | 1e-166 | A0A498J0U0_MALDO; Uncharacterized protein | ||||
STRING | XP_009370127.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10321 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-43 | bHLH family protein |