PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 601aa MW: 67461.7 Da PI: 4.8665 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 283.6 | 5.8e-87 | 228 | 598 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshl 96 ve Ll Ae v ++ e+a +lL+r ++s++g+p++R++++f eAL++++ r++ +++ ++ +++ + + + ++ +++ + P+ ++ ++ Pbr011959.1 228 VEFLLVSAEKVGYQQYERAGNLLKRCDSRSSSTGNPVERVVHFFSEALREKIDRETGRVAPKVlGNKQSFNVDRAMKIPNDTTlaCQIKLPFGQVVQF 325 6789999***********************************************777776555344444434444444444443455668******** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 + qaI+e v+++++vH+iD++i +G+QW L+qaLasR + l+iT+vg + +e++eetg+rL +fA+++++pf f++++++++ dl+ ++ Pbr011959.1 326 AGIQAIVENVAEAKKVHVIDLEIRNGVQWTGLMQALASRCDClLELLKITAVGT---TCRESVEETGKRLGSFAQTMNLPFCFKIVMVEDMLDLKEDM 420 ***************************************9652669********...69*************************************** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++++ +E+++V ++++l +++ ++ les +k++k+++P + vv+e ea+hns+ F++rf++al y+++ fd+le+ + r++ +r+ +E +++g Pbr011959.1 421 FELDFEETVVVYSQFALRSMVPKPDRLES----AMKVIKNIRPCLTVVTEVEANHNSPVFVTRFIDALFYFAVYFDCLESCIQRDDPNRSILESMYFG 514 ********************977777777....***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+va+eg+er+ r+ + Wr+ + + G+++++ls++ qa+l+l++++ ++ +++ + ++l+lgWk+ pL s+S W+ Pbr011959.1 515 TGIRNIVANEGEERNIRNVKIDVWRAFFARYGMEEIELSSSSLYQADLILKNFPyGNSCTLNMDGKCLLLGWKGTPLHSLSLWK 598 ******************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.544 | 201 | 577 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-84 | 228 | 598 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MTNAMFSFGD FNFGGVHDIF SSTEKGFDGM EAENNVGKQV NLFGAEEWGK LGEFGSVDSD 60 HGFYGNDYSS GGNLFPKYQQ EEQQQPLISY YGLYDAMQVD PLSMPFQACL GKIAKLEDIP 120 NLVPHVEPKK EKRDPFSSLA GLDLLNSYGS GFKRLNGERN FESSNYNACT DQVATGRKLS 180 TEEIMRVAGA RFIQTYSQVS DVPSMLSHPF GSSFSGLSYE EARDVELVEF LLVSAEKVGY 240 QQYERAGNLL KRCDSRSSST GNPVERVVHF FSEALREKID RETGRVAPKV LGNKQSFNVD 300 RAMKIPNDTT LACQIKLPFG QVVQFAGIQA IVENVAEAKK VHVIDLEIRN GVQWTGLMQA 360 LASRCDCLLE LLKITAVGTT CRESVEETGK RLGSFAQTMN LPFCFKIVMV EDMLDLKEDM 420 FELDFEETVV VYSQFALRSM VPKPDRLESA MKVIKNIRPC LTVVTEVEAN HNSPVFVTRF 480 IDALFYFAVY FDCLESCIQR DDPNRSILES MYFGTGIRNI VANEGEERNI RNVKIDVWRA 540 FFARYGMEEI ELSSSSLYQA DLILKNFPYG NSCTLNMDGK CLLLGWKGTP LHSLSLWKFL 600 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-37 | 232 | 598 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011959.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370004.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A192ADG3 | 0.0 | A0A192ADG3_PYRPY; DELLA protein RGL1 | ||||
STRING | XP_009370004.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-57 | RGA-like 2 |