PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr011520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 39805.1 Da PI: 6.3766 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.2e-09 | 18 | 61 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +++ ++G+ +W++++++ g +R++k+ ++rw ++ Pbr011520.1 18 WTAEEDAKILAHESKHGTSNWTSVPKKPGITRCGKSSRLRWPNH 61 *****************************99**********776 PP | |||||||
2 | Myb_DNA-binding | 45 | 2.5e-14 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W +Ia+ ++ gRt++++k++w++ Pbr011520.1 70 SFTPHEEELIVRLHATIGSR-WPAIAQQLP-GRTDNDVKNYWNT 111 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.335 | 10 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-23 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-5 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.66E-6 | 18 | 58 | No hit | No description |
Pfam | PF00249 | 5.4E-8 | 18 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-16 | 18 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.654 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-10 | 70 | 113 | No hit | No description |
Pfam | PF00249 | 1.4E-12 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MVRPACCDKL HVKRDTLWTA EEDAKILAHE SKHGTSNWTS VPKKPGITRC GKSSRLRWPN 60 HFKPNLKHES FTPHEEELIV RLHATIGSRW PAIAQQLPGR TDNDVKNYWN TKLKKKLSEM 120 GIDPVTHKPF SQVLADYGNI GGVSKVGMRI GIGSLNKDLK NAMLMKPAEP YLLPAQGFSN 180 INSHLMPITM IPTKAEPILD SFLGHNQPSS QPPDLLTQLQ AIKLVTEASK SMEFQSSAPY 240 FYSHEGTLSS PSSTSSSAAQ EQATLQTFSW SDFLLEDAFM PIGDTQEHKN KAEYSSKNIA 300 QVAVQQSQID MDYAISSNEI EATSPACDSS FVEAMVSREN EMFLEFPELL EEPFYY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-25 | 18 | 117 | 10 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr011520.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369384.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A498JK48 | 0.0 | A0A498JK48_MALDO; Uncharacterized protein | ||||
STRING | XP_009369384.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-60 | MYB family protein |