PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011503.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 367aa MW: 41525.9 Da PI: 6.8337

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011503.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.9	8e-39	71	171	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC+++C+l pyfpa+qpk ++n+hklFG+sn+lk+lk+l++ ++ +am+s++y+A+ r + PvyG+ +vi++lq q+ ++++l++++ Pbr011503.1 71 ACAACKYQRRKCTAECPLVPYFPADQPKMYQNAHKLFGVSNILKILKNLDPRQKVEAMRSIIYQANLRDKFPVYGCWEVIRQLQYQILAAEEQLQAVH 168 7************************************************************************************************9 PP DUF260 99 eel 101 ++l Pbr011503.1 169 QQL 171 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.415	70	171	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-37	71	168	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MLSIPPPPFL LPLLLLLQLT ATLLLLLFNF KHCTTLLSNC FRDFSRSRLS DWFRLRFGIR 60 KMPLKGATLQ ACAACKYQRR KCTAECPLVP YFPADQPKMY QNAHKLFGVS NILKILKNLD 120 PRQKVEAMRS IIYQANLRDK FPVYGCWEVI RQLQYQILAA EEQLQAVHQQ LAMYRQHHHH 180 QISSMPEYVM SQLELGMAPP NNALALFDYN LPPCILTNNN NATAVAPVNQ HQQQSYSNSS 240 SAAYNSDSKD NVNNNINNNN AGNPLWSSNP FMTNNSNNNN NDNNSEAIES ELGALQQLSI 300 QPGVVQDYNE LHPFFDTTDD RQSYIDSKEA YDSSSEESFK GTTQSMEHAE NALKYDAACF 360 SLTSVN*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MLSIPPPPFL LPLLLLLQLT ATLLLLLFNF KHCTTLLSNC FRDFSRSRLS DWFRLRFGIR  60
KMPLKGATLQ ACAACKYQRR KCTAECPLVP YFPADQPKMY QNAHKLFGVS NILKILKNLD  120
PRQKVEAMRS IIYQANLRDK FPVYGCWEVI RQLQYQILAA EEQLQAVHQQ LAMYRQHHHH  180
QISSMPEYVM SQLELGMAPP NNALALFDYN LPPCILTNNN NATAVAPVNQ HQQQSYSNSS  240
SAAYNSDSKD NVNNNINNNN AGNPLWSSNP FMTNNSNNNN NDNNSEAIES ELGALQQLSI  300
QPGVVQDYNE LHPFFDTTDD RQSYIDSKEA YDSSSEESFK GTTQSMEHAE NALKYDAACF  360
SLTSVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	72	174	12	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	72	174	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011503.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369373.2	0.0	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A498JK57	0.0	A0A498JK57_MALDO; Uncharacterized protein
STRING	XP_009369373.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-47	LOB domain-containing protein 27