PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 242aa MW: 27339.1 Da PI: 9.5546 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.2 | 1.8e-12 | 16 | 100 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W + + aLi+a ++ +l+ g l+++ W+ev++++ + +g+ +++ +qC+++++ l+k+yk +k + s++p++++l+ Pbr010927.1 16 CWNEADTEALITAWGDRYLHLNHGILRQKEWKEVADAVnstQNGGVkpSKTDVQCRNRIDTLKKKYKLEKSKPGP------SKWPFYRRLH 100 7*************************************99977777557899***************99988886......58*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-24 | 14 | 102 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNRRTRTHAP AGREDCWNEA DTEALITAWG DRYLHLNHGI LRQKEWKEVA DAVNSTQNGG 60 VKPSKTDVQC RNRIDTLKKK YKLEKSKPGP SKWPFYRRLH SLICSTPSNA AVSTESKPPI 120 LALNGKSPDP SPYPLEGSRR DDGGDEAAGL SGGAVCRELA RAISRFGEMY ERIENSKRKQ 180 MMELEKQRME FDKELELQRL NMFMDVQVEL GKKMKLSTYS HSSGPAIAES FMSSFLVIFD 240 R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369199.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A498JHW1 | 1e-162 | A0A498JHW1_MALDO; Uncharacterized protein | ||||
STRING | XP_009369199.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 3e-55 | sequence-specific DNA binding transcription factors |