PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010573.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 355aa    MW: 39337.7 Da    PI: 7.0223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010573.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-09186233455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  Pbr010573.1 186 SHSLAERVRRQKISERMKMLQRLVPGC----DKITGRAVMLDEIINYVQSLQ 233
                  8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-16180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-10180237No hitNo description
PROSITE profilePS5088815.129182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16182245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAFSYQNPH HPSLLDSIFL PNSPTTNNIN TDSNFSQSFY PSAPLTQEIQ ADNNSRAVES  60
SCTMDHSSTK VAFSDNENDP SVTKNKSTES STVVDVDRLE IGDQVTQKVT PMGKKRKSRP  120
GSSFNSAQSK GTKEQKGKKQ KKIDGGTKKD EEKKIKSDEE DQVKAREGPP TGYIHVRARR  180
GQATDSHSLA ERVRRQKISE RMKMLQRLVP GCDKITGRAV MLDEIINYVQ SLQNQVEFLS  240
MKLDSSNPMF YDFGMDLGAL VVKPERLCSM ESPYQSVQTQ PTPFADTSTN ITATAAAFTT  300
NNNCPFLDSS ASLLLQRPNT FSQDSESLLW DVEDQRQSFL NPSGFSNSNL CSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408784e-70EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368786.10.0PREDICTED: transcription factor bHLH137-like
RefseqXP_009368787.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A498JQT10.0A0A498JQT1_MALDO; Uncharacterized protein
STRINGXP_009368786.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-55bHLH family protein