PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010535.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 573aa    MW: 64686.6 Da    PI: 7.0747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010535.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.67.2e-2865149187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+ aL+++r++m++++r+++lk+plWe+vs+k+ e g+ r++k+Ckek+en+ k+++++keg++++  ++ +t+++fd+lea
  Pbr010535.1  65 RWPRQETVALLKIRSQMDDAFRDSSLKAPLWEDVSRKLGELGYYRTAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 149
                  8********************************************************************96..45557******985 PP
2trihelix95.93.6e-30406490186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev aLi++r+ ++ +++++  k+ lWee+s  m++ g++rs+k+Ckekwen+nk+ykk+ke++k r se+s+tcpyf+ l+
  Pbr010535.1 406 RWPRVEVEALINLRTCLDVKYQESGPKGSLWEEISVGMKRLGYNRSAKRCKEKWENINKYYKKVKESSKTR-SEDSKTCPYFHLLD 490
                  8********************************************************************98.89999******886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001162124IPR001005SANT/Myb domain
PfamPF138371.3E-1864149No hitNo description
CDDcd122031.52E-2264129No hitNo description
PROSITE profilePS500906.82964122IPR017877Myb-like domain
SMARTSM007170.033403465IPR001005SANT/Myb domain
PfamPF138371.6E-20405490No hitNo description
PROSITE profilePS500906.806406463IPR017877Myb-like domain
CDDcd122034.02E-27406470No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MPAVPAAVPD NSSTMFPSGG SSGVEAADTA EVVPEGSHES ETTNVLSNSV QEENKGDRNL  60
SGGNRWPRQE TVALLKIRSQ MDDAFRDSSL KAPLWEDVSR KLGELGYYRT AKKCKEKFEN  120
VYKYHRRTKE GRSGKQEGKT YRFFDELEAF AHQNHHHPST IQPKPQVVLW PTMNNSHPNN  180
PSLVVPHVTI TTLPLSSTPS ILTPTNGSLP NGPQISPPHI TISPLNLSHQ NLNGFKPNLA  240
ANNLFSSSTS STASDEEFQV QPRNKRKRKW KYFFRRLTKD VLEKQEKLQE KFLEAIAKCE  300
HQRMAREEAW RMEEMARMSK EHEILAQERS LAAAKDAAVI EFLHKVSGQQ NLTNMQAIEA  360
PSSQPQPMSV LMPPPLPAPV AVTRSSNFEV PKLNKGESPF PAGSTRWPRV EVEALINLRT  420
CLDVKYQESG PKGSLWEEIS VGMKRLGYNR SAKRCKEKWE NINKYYKKVK ESSKTRSEDS  480
KTCPYFHLLD ILHSKKNNKN DASYVEKPIA ETMRPLIKVQ PDQPVIEDIE RENGDRNGDD  540
EDGESTEEED RSDDQMEMVT NDKDSSMDMV DS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368514.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A498JY460.0A0A498JY46_MALDO; Uncharacterized protein
STRINGXP_009368514.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-93Trihelix family protein