PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009640.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 440aa    MW: 48527.3 Da    PI: 5.0939
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009640.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.8e-121153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 i n+  r+ +f kR + + KK  EL +LCd+ + +i+++++g+
  Pbr009640.1 11 IVNDNARKSSFRKRNACLVKKMRELTTLCDISAFIIVYGEDGE 53
                 679999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.012153IPR002100Transcription factor, MADS-box
CDDcd002664.89E-23285No hitNo description
SuperFamilySSF554555.23E-21293IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-121153IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-53859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.10.108.2E-485134IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MTRNKVKLAW IVNDNARKSS FRKRNACLVK KMRELTTLCD ISAFIIVYGE DGEEPTVWPD  60
RTVVEQLIAR FQSIPDLERW KKMMSQETYL KDRAAKMQEQ IRKIMKKNNE LNTNNVLNQI  120
IEKGKPLFEF DDNDLTGVVF SLEERMKEIQ KRIDYFEQEN PNHPPSTPSQ GGGDQSEMIS  180
QIGSDFPESL FMYKDLGKQI QNNYGPTISV RSDIVIPPSS LFGNFTIAND MGMPFWNLGG  240
NCDGSDLGLP KKIRSVEGPR SGVGDNMGVH SGFFKYQNYV GSDNEYGNYK ESRPFCDWGV  300
GGDGSDKRLT LMNSEDMNGG TGMEQEVFPS YATKAAGITS NVGSDLGLGM TSYNEDTGFR  360
IGDDKAGSNN GVFGHLPHQF NIGVRTESHI NLPSASFGGN GAGSDVGLLP GLFAGSNAGS  420
DVGHPYDVSK SWQFPFSSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009640.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343826.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLA0A498I7U50.0A0A498I7U5_MALDO; Uncharacterized protein
STRINGXP_009343826.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-26AGAMOUS-like 80