PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009179.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 625aa    MW: 70044.5 Da    PI: 6.0061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009179.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.7e-054414721854
                  HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++++ Lr+++P+      + ++Ka+iL  +++Y+k+L
  Pbr009179.1 441 EKLFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 472
                  67899*******6.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3612159IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.045423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-4431472No hitNo description
SMARTSM003530.003432478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-7440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-7441487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAQNHERVPE NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKTVEG  60
MEIKTDKMGL QRNVQLRELY KSLLDGETEA EQQAKAPSAA LSPEDLTDAE WYYLLCMSFV  120
FNPGEGLPGR ALATGQTIWL CNAQHADSKV FSRSLLAKVM EDLNLIQHIK ASLLDFSKPD  180
CCEKSSSAPH KADDDSEQIV AKVDHDVVDT LDLENLYSPS EEIKFHHRGI NDLHGNHEEV  240
NMDSPYGCSN GCDHNHQTED SMMLEGTNAA SQVQSWHFMD EDFSVQDSMN SSDCISEAFV  300
NQGKAHSSAK CENANHVNVK ELQNFNDTKL SSLDLGSVDE HVHYKRTLSA LLASSTKLIE  360
NPCFCDGDCK SSFMKWKKGV VGGCRPTVHQ KILKKILFTV PLMSGVRSPR ATGKENTGKN  420
VLPNLQGDDI HREHDKMRES EKLFVLRSMV PSITEVDKAS ILDDTIKYLK ELGARAEEME  480
SSMDTVEAIA RMKFLNRVEK TSINYDKTKM DNVKRSLLNK RKACDIDETD PYLNRLVPGE  540
SLPLDVKVCV KEQEVVIGMR CPYREYILLD IMDAINNLYL DAHSVQSSTL DGVLTLNLKS  600
KFRGAAISPV GMIKQALWKI AGKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009179.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0056230.0KR005623.1 Pyrus pyrifolia HLH33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367859.10.0PREDICTED: transcription factor EGL1-like
TrEMBLA0A0M5K4P90.0A0A0M5K4P9_PYRPY; HLH33
STRINGXP_009367859.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-133bHLH family protein