PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr009072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 31420.3 Da PI: 6.4057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 147 | 191 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + ++Y+k L Pbr009072.1 147 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 191 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.64E-14 | 140 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.783 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 144 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 147 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-10 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MANNPSEAQA DDFLEQILGL QNFASADANL ARSDGGLAGG QVSQASMMLQ LNSGNGSGHI 60 GGGGGGFHGG VFPLGLSLEQ GKAGFLKHEE ASGSGKRFQD DVVDSRGSSV KNVFHGQPIS 120 NTVAAAPHPP AMRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP SVNKTDRAAM 180 LDEIMDYVKF LRLQVLSMSR LGGAGAVAPL VTDIPLSSVE EEGGEGGRNQ PAWDKWSNDG 240 TERQVAKLME ENVGAAMQFL QSKALCIMPI SLASAIYHTQ SPDTSSVVKP EMNPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 156 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr009072.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689410 | 0.0 | KP689410.1 Prunus pseudocerasus isolate Unigene16804 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008382959.1 | 0.0 | transcription factor UNE12-like | ||||
Refseq | XP_009367753.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-129 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | M5W8A1 | 0.0 | M5W8A1_PRUPE; Uncharacterized protein | ||||
STRING | XP_009367753.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_008382959.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5449 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-101 | bHLH family protein |
Publications ? help Back to Top | |||
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