PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008639.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 348aa    MW: 38326.5 Da    PI: 6.4361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008639.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.2e-34178235259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  Pbr008639.1 178 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFDDPSIVVTTYEGQHTHR 235
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.6E-1033347IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.8E-35162237IPR003657WRKY domain
SuperFamilySSF1182901.96E-29169237IPR003657WRKY domain
PROSITE profilePS5081131.41172237IPR003657WRKY domain
SMARTSM007742.1E-40177236IPR003657WRKY domain
PfamPF031067.5E-27178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNVKKDVVKR EDNINSNHMN GGGGGGGLTT SPFAGMFDFC EGEKSSSLGF MELLGVGVGQ  60
DYCPTSLFDY LPQTPSTVLP SLASTMGGKD QLSTDYSSLN QQPTTPNYSS ISSESSEAVN  120
EEHTDHKAAT DQEKNNEEEE HDEQQKTKKE LIAKKASRKR QREPRFAFMT KSEVDHLEDG  180
YRWRKYGQKA VKNSPFPRSY YRCTSASCNV KKRVERSFDD PSIVVTTYEG QHTHRSPLLP  240
RPTLPAASAF PANNFAMPLI PTRTLFTHDY QQVQPFADSN SSSPSSAPIN FGDYYVNGSS  300
LCLTNATSTA GFLHPERWFC SPATGSALLA DHGLLQDIVP AHMLKQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-27167237777Probable WRKY transcription factor 4
2lex_A7e-27167237777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700100.0KC770010.1 Pyrus pyrifolia microsatellite TXY20 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367202.10.0PREDICTED: probable WRKY transcription factor 23
TrEMBLA0A498HAA70.0A0A498HAA7_MALDO; Uncharacterized protein
STRINGXP_009367202.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.18e-56WRKY DNA-binding protein 23