PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008557.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 362aa MW: 40942.2 Da PI: 7.3902

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008557.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	75	117	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++k+ rr+++NReAAr+sR RKka++++Le+ +L + ++L Pbr008557.1 75 ADKARRRLEQNREAARKSRIRKKAYVQQLETSRLKLAKLEQEL 117 7899**************************9666666555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-9	71	122	No hit	No description
SMART	SM00338	4.2E-5	73	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	75	119	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-6	75	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.71E-7	77	115	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-27	166	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSYPSTQFAT SRQMGIYEPF RQVDVWKETL RGDHGSNTAA SSIIEVDSGI ETKFGFVSHE 60 SMMPSGNDHE PNRSADKARR RLEQNREAAR KSRIRKKAYV QQLETSRLKL AKLEQELDKA 120 RKQGAYAGNA LGTSHMGYNG ALNSGITTFE MEYGHWVEEQ YRQNVELRNA LQDHVTDIEL 180 LKLVKGALNH YANLFRMKAD AATADVFYLL SGIWRTSVER YFHWIGGFRP SELLNIVLPQ 240 LQPLTEQQLL DFCNLRLSSQ QAEDALSQGM DKLQQTLALS IAADQMSGES FGSQMASALE 300 KLEALENFVS QADHLRQQTL QQMSRILTTY QAAQALLAMG EYFHRLRALS SLWTARPREP 360 T*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSYPSTQFAT SRQMGIYEPF RQVDVWKETL RGDHGSNTAA SSIIEVDSGI ETKFGFVSHE  60
SMMPSGNDHE PNRSADKARR RLEQNREAAR KSRIRKKAYV QQLETSRLKL AKLEQELDKA  120
RKQGAYAGNA LGTSHMGYNG ALNSGITTFE MEYGHWVEEQ YRQNVELRNA LQDHVTDIEL  180
LKLVKGALNH YANLFRMKAD AATADVFYLL SGIWRTSVER YFHWIGGFRP SELLNIVLPQ  240
LQPLTEQQLL DFCNLRLSSQ QAEDALSQGM DKLQQTLALS IAADQMSGES FGSQMASALE  300
KLEALENFVS QADHLRQQTL QQMSRILTTY QAAQALLAMG EYFHRLRALS SLWTARPREP  360
T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008557.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009367344.1	0.0	PREDICTED: transcription factor TGA7 isoform X3
Refseq	XP_018505330.1	0.0	PREDICTED: transcription factor TGA7 isoform X4
Swissprot	Q93ZE2	1e-155	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A498J846	0.0	A0A498J846_MALDO; Uncharacterized protein
STRING	XP_009367342.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-143	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]