PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008403.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 302aa    MW: 33668.5 Da    PI: 7.0648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008403.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.26.3e-20223257135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +l
  Pbr008403.1 223 CAHCQVTKTPQWREGPLGPKTLCNACGVRYRSGRL 257
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.229217253IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16217267IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15219280No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14221254IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.88E-16222279No hitNo description
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
PfamPF003208.7E-18223257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTAVSADVAK LTKRENISDM DGSLPADGAF NYESFLSTDI LSALDFPMED IDDSVEDNDW  60
DTKFQDIEPP PNIDQLLGPG IFSYDDEKKH TNLSTPYGHM YQRPQFPSVT CETIRSRVSL  120
RKDDLESIGS CAAQFEPKFE KRTRSKLSRS RRANPIIFST QFILSTSSNS SASENLYRWD  180
DCEFDLEASR TEDTSNTAKR KHKKKTGKLS TDEAGESRET KRCAHCQVTK TPQWREGPLG  240
PKTLCNACGV RYRSGRLLPE YRPAASPTFI ASVHSNSHKK VIELRSKSCQ GASMGILSSG  300
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008403.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367061.10.0PREDICTED: GATA transcription factor 11
RefseqXP_018505270.10.0PREDICTED: GATA transcription factor 11
TrEMBLA0A498KAX70.0A0A498KAX7_MALDO; Uncharacterized protein
STRINGXP_009367061.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-37GATA family protein