PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr007344.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 469aa MW: 48551.5 Da PI: 6.6559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr007344.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	262	307	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pbr007344.1 262 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 307 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.49E-13	255	311	No hit	No description
SuperFamily	SSF47459	6.15E-17	255	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	257	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-16	259	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	262	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MQPCSREMQE MNSLLNSSAS SSQLSLQDHH HLQQQPHSHS QMHHQIPTPS ASHFDSATHD 60 DFLEQMLSTL GPSWASAADD APPLLSSNPD NVVFSYDDSA TLAAKFRSQQ ISAGSGANKS 120 ASASAAAAAA MMLQHQLMMS RSGAADSGFG PTGLSLGTNG DFDRSNNDVG DGSSFKSPNQ 180 VGGDGASPVQ SLFNGFGASL HGAANSQSPN FHYPQEGQLQ TQNYGGAGAA VNQAPVGGSA 240 GAAPAQPRPK VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII 300 DYVKFLQLQV KVLSMSRLGG AGAVAPLVAD MSSEGGGDCI QASANGGTRG RSSNGNQTAS 360 SSNDNSMTVT EHQVAKLMKE DMGSAMQYLQ GKGLCLMPIS LATAISSATC HSRNPLLHNN 420 SNNHQVVPSN GGDGPSSPSM SVLTVQSATM GNGGVDGSVK DATSVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MQPCSREMQE MNSLLNSSAS SSQLSLQDHH HLQQQPHSHS QMHHQIPTPS ASHFDSATHD  60
DFLEQMLSTL GPSWASAADD APPLLSSNPD NVVFSYDDSA TLAAKFRSQQ ISAGSGANKS  120
ASASAAAAAA MMLQHQLMMS RSGAADSGFG PTGLSLGTNG DFDRSNNDVG DGSSFKSPNQ  180
VGGDGASPVQ SLFNGFGASL HGAANSQSPN FHYPQEGQLQ TQNYGGAGAA VNQAPVGGSA  240
GAAPAQPRPK VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  300
DYVKFLQLQV KVLSMSRLGG AGAVAPLVAD MSSEGGGDCI QASANGGTRG RSSNGNQTAS  360
SSNDNSMTVT EHQVAKLMKE DMGSAMQYLQ GKGLCLMPIS LATAISSATC HSRNPLLHNN  420
SNNHQVVPSN GGDGPSSPSM SVLTVQSATM GNGGVDGSVK DATSVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	271	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr007344.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366166.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	9e-91	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A498KJ29	0.0	A0A498KJ29_MALDO; Uncharacterized protein
STRING	XP_009366166.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]