PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YA | ||||||||
Protein Properties | Length: 349aa MW: 37857.3 Da PI: 8.8551 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.5e-32 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF Pbr006945.1 172 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-35 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.201 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.0E-28 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MQPKNEAENR LHAHPIPPSG VYSEPWWCSA GHNPISPTGT GRNATNSSLL ECPNGGSQSN 60 DGQSLSNDET NEDDDDATKD SHITSPRSAG NYGQDHRNVK HVGSGVPTVR DDCLAQPPQL 120 ELVGHSIACA SNPYQEPYYG GMMAAYGHQP LGYPPFFGMP HARMPLPLEM AQEPVYVNAK 180 QYQGILRRRQ ARAKAELERK LIKVRKPYLH ESRHQHAMRR ARGTGGRFAK KTNGDNSNST 240 RQEKGRGSGP AHSSQSGSSS GSEPFPSDSA ETWNSPNSQR EARGSQVHDA YAAHNYANGS 300 GCYQPHGGLQ ASMYPSYSGK RGEGGDWKGQ QQGNISSNQA SQRRLAIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-18 | 172 | 236 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006945.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366099.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_009366100.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q9LXV5 | 4e-78 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A498IPB3 | 0.0 | A0A498IPB3_MALDO; Uncharacterized protein | ||||
STRING | XP_009366099.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 3e-72 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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