PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006795.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18386.4 Da    PI: 10.4573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006795.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+n++ r+ tf kR++g +KK +E+ +LCd+e++ +++++++
  Pbr006795.1 11 IQNHTTRKLTFKKRKKGFMKKMSEITTLCDVEACAVVYGQND 52
                 99*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.381151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSRKKVKLAY IQNHTTRKLT FKKRKKGFMK KMSEITTLCD VEACAVVYGQ NDTQPEVWPS  60
PSGVQGTYAK FRTMPSMEQT KKQLNMETFL RQRIDKAKDQ LRKQKKENRE KEMSILMSQC  120
LTGRSLQDLN MGDLNDLGWV VDHKVEEINR KVQKVQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIQNHTTRKLTFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006795.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365769.21e-111PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-48AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A498JUI86e-97A0A498JUI8_MALDO; Uncharacterized protein
STRINGXP_009365769.11e-114(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]