PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006251.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 299aa MW: 34356.6 Da PI: 8.2546

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006251.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.3	3.2e-49	26	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 + pG+rFhPtdeelv +yL++kve+k+++l + ik+vdiyk++PwdLpk ++++ke yfF++r +ky+++ r+nr+tksg+Wkatg dk+v+s Pbr006251.1 26 MLPGYRFHPTDEELVRFYLRRKVENKPIRL-DLIKHVDIYKYDPWDLPK--ESGDKESYFFCRRGRKYRNSIRPNRVTKSGFWKATGIDKPVYSVgdF 120 579*************************.99***********4..46899**********************************8555 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Pbr006251.1 121 HNCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152 566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-54	22	179	IPR003441	NAC domain
PROSITE profile	PS51005	52.239	26	180	IPR003441	NAC domain
Pfam	PF02365	3.5E-25	28	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEEVDQKMMS ASDSNNMIYK DQDANMLPGY RFHPTDEELV RFYLRRKVEN KPIRLDLIKH 60 VDIYKYDPWD LPKESGDKES YFFCRRGRKY RNSIRPNRVT KSGFWKATGI DKPVYSVGDF 120 HNCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPASSNNDT SIKNSTQEAE VWTLCRILKR 180 DHTSCGKYTS NNWRMTTLNP KQSVASKTCS SESDATFGAL AANDQSERSP LFNNVHTYVG 240 NQFSLGWLSL NDDVNNPNSC MSFPNTPNEE MLTSNGNWDE LRPMVDCVLN PSLLYSYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-45	21	177	10	165	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006251.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350270.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A498K0B6	0.0	A0A498K0B6_MALDO; Uncharacterized protein
STRING	XP_009350270.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	5e-88	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]