PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006215.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 335aa    MW: 37167.2 Da    PI: 7.0925
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006215.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.5e-32147200255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pbr006215.1 147 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 200
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-15144201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28145201IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23147200IPR006447Myb domain, plants
PfamPF002492.1E-7148199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMKNTSLPLP DLSLQISPPS SADDLPYDIG VTRKALYSTD RSSATDSGSS ASDSSQENGF  60
YHLERSSSYN LASADEEPKL SLGFDEMKDH HHHMASPLPP ALQMPSNFNS NHYFNHHHHH  120
HHPQIYGREF KRSARTVGGV KRSIRAPRMR WTTTLHAHFV HAVQLLGGHE RATPKSVLEL  180
MNVKDLTLAH VKSHLQMYRT VKSTDNKGTG HEGQTDMDLN QNPGTNPALQ INGQLSCEKA  240
NINRGSWPSS TEMNGSSNLR HGHGLTYSHS PPSNGTKVEE EDSGHHVYDQ SMKERPMLDC  300
SSLASSDMYL NLEFTLGRPS GEWTVLNSLN LQMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834731e-121KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365638.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A498J6790.0A0A498J679_MALDO; Uncharacterized protein
STRINGXP_009365638.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-59G2-like family protein