PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24580.4 Da PI: 9.6176 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.4 | 4.9e-15 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ien+s r+ tf kRr+g +KK +E+ LCd+ + ii+s+++ Pbr005989.1 10 FIENDSSRKATFRKRRTGFMKKMYEINKLCDVPTCAIIYSPDQ 52 8***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.128 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.07E-25 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-21 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTKRKLKLAF IENDSSRKAT FRKRRTGFMK KMYEINKLCD VPTCAIIYSP DQPQPDVWPD 60 PSEVRRLIEL FKNVPEKERN KKMVTHGMFL KQRIEKEQEK LNKLKKENRE KELRMAMSQC 120 LAGKPLNGLD FTNLQEMGWM IDEKLKDIAV TKSRKENELA EINQPLVGQP PAHATSADEN 180 TQDAIQLAPW SVGGVRSSKF GEVDDQIMPL GDY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | KRKLKLAFIENDSSRKATFRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005989.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335562.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_009365496.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A498IJ48 | 1e-145 | A0A498IJ48_MALDO; Uncharacterized protein | ||||
STRING | XP_009335562.1 | 1e-158 | (Pyrus x bretschneideri) | ||||
STRING | XP_009365496.1 | 1e-158 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27688 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-26 | AGAMOUS-like 80 |