PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 683aa MW: 76566.7 Da PI: 5.9086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.1 | 9e-15 | 459 | 506 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h Er+RR+++N++f L++++P+ K +K++iL A+eY+k+Lq Pbr005095.1 459 TNHALSERKRREKLNERFCILKSMVPSV-----SKEDKVSILDDAIEYLKDLQ 506 58999**********************6.....49*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.6E-52 | 7 | 214 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.247 | 456 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-12 | 459 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-15 | 459 | 510 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 459 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-18 | 459 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-14 | 462 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MAVPENLRKQ LALAVRSIQW SYGIFWSISA RQPGVLEWGD GYYNGDIKTR KTVQAIELNA 60 DQMGLQRSEQ LRELYESLSA GEASPQARRP SASLSPEDLA DTEWYYLVCM SFVFNIGQGL 120 PGRTLANGKP TWLCNAHYAD SKFFSRSLLA KNEVLKHLFS VWFSFDAWIC TCHPQSASIQ 180 TVVCFPFLGG VIEIGVTELV LEDPSLIQHV KTSFLEAPYP ILASKRTNPS AGSTRNDNDL 240 ACAMLDDDVV DTKFIPVVGC PEMDVTSPDD SSNCLGRPNQ PVDDSFIIEG MNRGASQVQS 300 WQFMDDEISN FVHHSMDSSD CISQTLVYPE KVLFGPKTEK VNDHCPHELK ECNNTKMTSS 360 DPQGNDLQYQ SVLSALLKSS HQLVLGPHFQ NSHQESSFAS WKRGWFVKCR TQRGGTPQKL 420 LKKILFEVPQ MHVDCVLVSP GDKSNANGVW RPEADEIGTN HALSERKRRE KLNERFCILK 480 SMVPSVSKED KVSILDDAIE YLKDLQKRVE ELESLREPTD SEAKIKRKLQ DTVERTSDNR 540 CNTKISNGKK PIVYKRKASD MDETEPEISH IVSKNGSSDN ITVNMTNKDV LIEMKFPWRE 600 GVLLEIMDTT SRLRLDTHSV QSSTADGILS LTIKSRGDEY CINGDNQAST SQNCQKLMYL 660 AFVVISRILS LYNCITLKGS VD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 464 | 469 | ERKRRE |
2 | 465 | 470 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005095.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364930.1 | 0.0 | PREDICTED: transcription factor EGL1-like | ||||
Refseq | XP_009364938.1 | 0.0 | PREDICTED: transcription factor EGL1-like | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A498HZI2 | 0.0 | A0A498HZI2_MALDO; Uncharacterized protein (Fragment) | ||||
STRING | XP_009364930.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009364938.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |