PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004606.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 631aa    MW: 70830.9 Da    PI: 9.127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004606.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07537586147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Pbr004606.1 537 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFeseKHRTYVDLKDKWKTL 586
                      567888899*****************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.07E-6346419IPR029071Ubiquitin-related domain
PROSITE profilePS5129412.852532591IPR017930Myb domain
SuperFamilySSF466894.81E-15534623IPR009057Homeodomain-like
SMARTSM007179.0E-7536589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9537587IPR009057Homeodomain-like
CDDcd116608.02E-16538588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVLQRRLEYG FNGYRVPEVP RASRSARGRG PIRSKFEANQ IHAFESLASV AGKLLQESKD  60
PLPTNDSCGK DPHFKFDVIT KSEQQDTGNL LKEEPCELGS CDEETFLYVH GLQERQESYT  120
LNGVSHSQEN FSYEINSVSK SLDSEGITIG KGLGAVDSRI FSGSYSNKVV NDSPLSGETI  180
VDLLKRKRAT EPSQDTSIKD ERTEFLGSSE DVMEVEERPH ELVSSGHDVK TLFSRECKNR  240
GPFLRHRSNI REVNRDDDEN TMTKEYEHPP DNGDRTIMNL AASGHDGKIR QVNRNWRTCY  300
AHQRSQKIYP FKKRKLFNWS PLNTSDRGCN CEDIFNSPDK IVNGDNCCAV KLSIKSFKVP  360
ELFIEVPTTA TVGSLKRTVM EAVTSILGDG LHIGILVQGK KVRDDNKTLL QTGISQDDKR  420
HNLGFILEPK RAKLTYPPFS EDPSLVSGRS QELTRHSTSL ESQPGTSDVS MNPPVLSLGG  480
RNGRDFKVPS LAGTLIGKTP PTCQALVAVP PVSMKALAVV PFHRKSGHQE YVQRRIRRPF  540
SVPEVEALVQ AVEKLGTGRW RDVKLRAFES EKHRTYVDLK DKWKTLVHTA RISPQQRRGE  600
PVPQELLDRV LATHAYWSHR HAKQQVKVAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-505216271107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305314QKIYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004606.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349458.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X3
TrEMBLA0A498IG740.0A0A498IG74_MALDO; Uncharacterized protein
STRINGXP_009349456.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-114TRF-like 2