PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004454.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 181aa MW: 21266.5 Da PI: 10.0978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004454.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.7e-05	25	72	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ ++Er RR++ ++++ L +llPk ++ +K i++++ I+ L Pbr004454.1 25 RVRRMINERMRREKHKQSYLALHSLLPKG-----TRSDKNWIVQMTAMNIQRL 72 5566799********************96.....5666777777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-8	20	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.315	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-4	25	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MLQFLRKSWQ PATARNEAEQ DGRQRVRRMI NERMRREKHK QSYLALHSLL PKGTRSDKNW 60 IVQMTAMNIQ RLERYKEELI KRNVELEELL VENEKERGKW SKMRLKVANP TSGIDSMLEV 120 LKCLQYLGLK ARNVHSNFSP EEFSAELEIE TKIGAAEIEE AVQETLNEAE RKLRFPFPGR 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	35	RQRVRRMINERMRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004454.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349402.1	1e-128	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A498HK44	1e-113	A0A498HK44_MALDO; Uncharacterized protein
STRING	XP_009349402.1	1e-128	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	4e-34	bHLH family protein