PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004435.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 295aa    MW: 32242.3 Da    PI: 8.4584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004435.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.2e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT +E+e l  +v+++G+g Wk I +          R+  ++k++w++ 
      Pbr004435.1  5 KQKWTVDEEEALRAGVRKHGTGKWKDIQKDPEfnlflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.199161IPR017930Myb domain
SuperFamilySSF466891.35E-16265IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
PfamPF002497.7E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-14556IPR009057Homeodomain-like
CDDcd116603.57E-23657No hitNo description
SMARTSM005262.4E-7162227IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150416.701164232IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-8165229IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.39E-10166231IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.6E-6168225IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGNPKQKWTV DEEEALRAGV RKHGTGKWKD IQKDPEFNLF LSSRSNIDLK DKWRNMTVSG  60
TGPREKSRPK TRTNQDATVA PVSVPQTSAA APVRHDSPAA AAPVRRDSPA AAPGGRDLPA  120
ATPVRRDAPA ATPVRRDAPT ETPVRRATTP VADDSAIGVS DAIPAPVCNA MIFEALSAST  180
DPNGLDTSAI VSYIEQRIEV PQNFRRSLTG RLRRLVLQDK LEKIQNCYKV KTDTVSVSSD  240
MLEESARAAA HSIAEAEYRS YLAAEQMKEA ERIYFMAENT ESMMQLAKEI LEQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285382e-47FR828538.1 Rosa rugosa mRNA for putative MYB transcription factor (myb5 gene).
GenBankFR8285472e-47FR828547.1 Rosa rugosa mRNA for putative MYB transcription factor (myb14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349373.10.0PREDICTED: single myb histone 3-like
TrEMBLD9ZJ740.0D9ZJ74_MALDO; MYBR domain class transcription factor
STRINGXP_009349373.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-40MYB_related family protein