PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004361.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 337aa    MW: 35463.7 Da    PI: 6.2417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004361.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10185229554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Pbr004361.1 185 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 229
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-15178239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-11178234No hitNo description
PROSITE profilePS5088816.526180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7185229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQILAV PPSYSAGGGG GESAGGGYGG EVGSMPMALQ LGSAGSSGGG  60
AGDRGGGGVG MGLGMPLGLN LEQRGFLGQD NRFRDEVVEA NNTNNTNTSN VSASINERDS  120
VHMSSLFPAF GHLQNHSSLR PTPRPPQPPH QFHSQPPPGP ANAVHHSPAI RPRVRARRGQ  180
ATDPHSIAER LRRERIAERM KALQELVPSC NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR  240
LGGAGAVAQL VADVPLSAVE GEGMEGGTNQ QAWEKWSNDG TEQQVAKLME EDVGAAMQFL  300
QSKALCIMPI SLAPAIFRTH QPDATTMVKP ESNSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272181e-153AB627218.1 Malus x domestica mRNA, microsatellite: MEST049, clone: FLW01_46_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364494.10.0PREDICTED: transcription factor UNE12 isoform X2
SwissprotO227684e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM141e-179A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGXP_009364493.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]