PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr004095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 354aa MW: 40901 Da PI: 6.7828 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.2 | 5.6e-10 | 47 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++ Pbr004095.1 47 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAVKLRN 94 789996.566899****999......44**********99************997 PP | |||||||
2 | B3 | 93.6 | 1.4e-29 | 172 | 267 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ltpsdv+k++rlv+pkk+a e+ + + +e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F+ + s+ Pbr004095.1 172 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEDNVTEDIELVFYDKLMRVWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVITFYACE-SD 267 99******************************997777899**************************************************654.44 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.22E-21 | 46 | 105 | No hit | No description |
Pfam | PF00847 | 7.6E-5 | 47 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.818 | 47 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-16 | 47 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-13 | 47 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.4E-17 | 47 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-32 | 169 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-28 | 171 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.89E-27 | 171 | 262 | No hit | No description |
PROSITE profile | PS50863 | 13.563 | 172 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-26 | 172 | 267 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-22 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MAEDASIMIS SAQRNVGLET SDSNETDFAL LHQNKRARHD NDVSFAKFKG VVPQQNGHWG 60 AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGKDLHR NFPWTNFTIQ EPDFQNHYTT 120 DAIIKMIRDG SYPSKFDAFV RSQTQSRIEE MSKGTNPIRV HGDGQVLCRQ LFQKELTPSD 180 VGKLNRLVIP KKYAVEYFPC ICENVEDNVT EDIELVFYDK LMRVWKFRYC YWRSSQSFVF 240 TRGWNRFVKE NNLKANDVIT FYACESDGQV IREEDRESTT FWLIDVMHSE GESKRLCLVE 300 EANKCKDLQV KLELNLGECS SYKFQKGEGK YSEDHRASIA EEKGIRLFGV NIN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-30 | 171 | 269 | 13 | 106 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr004095.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349427.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Refseq | XP_009364153.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Swissprot | Q9C688 | 1e-103 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A251NIM8 | 0.0 | A0A251NIM8_PRUPE; Uncharacterized protein | ||||
STRING | XP_009349427.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009364153.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-105 | RAV family protein |