PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004091.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 530aa    MW: 58437.1 Da    PI: 10.5367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004091.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.9e-101060244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44
                     ++W t E++llv+av+++G+ +W+++a ++g        + +++ +c++++
      Pbr004091.1 10 QPWGTLEELLLVCAVNRHGTQSWDSVALEVGrrcsptatTLLSADNCRDKF 60
                     79*****************************77777777667777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0019866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-4943IPR009057Homeodomain-like
PfamPF002492.9E-91061IPR001005SANT/Myb domain
CDDcd001672.79E-41160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MARERGTSAQ PWGTLEELLL VCAVNRHGTQ SWDSVALEVG RRCSPTATTL LSADNCRDKF  60
ADIKRRFVSE DVDDGSSGSL GAMVDELRRL RVAELRREVR RRDVSIVSLE LKVKRLVEER  120
ERSLKEDAGA NRPSKDLKRR GDDQRDGSPE NLAGKMNSGE DFGSDFNSDE RENRSFNESN  180
STSQRGDAKV NGATEKLAEE PRTDGNEPDP IRAKSRSEPD RDCSVNGKVA DDDDEDNQNN  240
NKKGGDDTAK ASRLGESSEL WESGGESKRE GKRGGGGAAA SRQQNSDVQS SASLSKRKRR  300
RGRGGEGGGG SRSRSRSSSG EEAEGDEVSP ATSKGVKQLK LVKPEPLMKV LKIIRSHRLG  360
SVFERRLRSQ PHEYGINELS SHDGLEALEA EKEKKENRRK KQGAARFLKR MKQNSPSTEV  420
KKETSDGSED DSEESEDEKK KKKPTTRSRK KPEVERNERV TRSSTGSGGG RGGGRRCQES  480
NGRGRRGVGR PPKRPETAAA EAGRRKRGRE NGEADQVGST GRRRKRTRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KRKRRR
2296300RKRRR
3438450KKKKKPTTRSRKK
4438451KKKKKPTTRSRKKP
5504525RKRGRENGEADQVGSTGRRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004091.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501456.10.0PREDICTED: bromodomain-containing protein 8-like
TrEMBLA0A498IV631e-179A0A498IV63_MALDO; Uncharacterized protein
STRINGXP_009349425.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-17DNA-binding bromodomain-containing protein