PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003708.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 527aa MW: 58081.1 Da PI: 6.3408

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003708.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	91	146	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L++ l L+ +qVk+WFqNrR+++k Pbr003708.1 91 KKRYHRHTAHQIQEMENLFKECPHPDDKQRMKLSQDLWLKPCQVKFWFQNRRTQMK 146 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-18	78	149	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-20	86	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.661	88	148	IPR001356	Homeobox domain
SMART	SM00389	4.9E-18	89	152	IPR001356	Homeobox domain
CDD	cd00086	7.13E-18	91	149	No hit	No description
Pfam	PF00046	3.8E-17	91	146	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	123	146	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MAMGGGNVVS PETLFPSPIQ NPNFNFMPTH HQLPFQPLSP ILSPPKEENG VVMMMRGKEY 60 QMLERGSGSD QVEEQSGNEQ EAHNQLQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR 120 MKLSQDLWLK PCQVKFWFQN RRTQMKAQQD RSDNVMLRTE NENLKNKNYR PQAALCNIMC 180 LDCGGPAMIG GIGIDEQHLR LENARLKEKA FPRVPDDFLY GNDSHASVAT TLMPSPEACK 240 NIMKLAQRMT RTVCVNMSTS NGQSWTAVSD SPDDTVRITT RKVTDPGQPI GVILTAASTT 300 WLTFSHYRVF ELLGKERHRA QPTAFYICSS IFLPMAIPCM KWLTLLMAFI LEIAFLFFRV 360 NVSSNSSQNA ELMLQERCTD ESGSLVMYAT MDVDGIQLAM SGEDPFCIPL LPLGFVIVPV 420 LPMQSSTSTA ADHGSSSPDQ NHESSVMNTG CLLTVGLQVL ASTSPSAKLN LSSAIAINNH 480 LCNSVQQIIS ALGSGNICTT TTDDDNGSVG DASGGSDHPT AASLQQ*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MAMGGGNVVS PETLFPSPIQ NPNFNFMPTH HQLPFQPLSP ILSPPKEENG VVMMMRGKEY  60
QMLERGSGSD QVEEQSGNEQ EAHNQLQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR  120
MKLSQDLWLK PCQVKFWFQN RRTQMKAQQD RSDNVMLRTE NENLKNKNYR PQAALCNIMC  180
LDCGGPAMIG GIGIDEQHLR LENARLKEKA FPRVPDDFLY GNDSHASVAT TLMPSPEACK  240
NIMKLAQRMT RTVCVNMSTS NGQSWTAVSD SPDDTVRITT RKVTDPGQPI GVILTAASTT  300
WLTFSHYRVF ELLGKERHRA QPTAFYICSS IFLPMAIPCM KWLTLLMAFI LEIAFLFFRV  360
NVSSNSSQNA ELMLQERCTD ESGSLVMYAT MDVDGIQLAM SGEDPFCIPL LPLGFVIVPV  420
LPMQSSTSTA ADHGSSSPDQ NHESSVMNTG CLLTVGLQVL ASTSPSAKLN LSSAIAINNH  480
LCNSVQQIIS ALGSGNICTT TTDDDNGSVG DASGGSDHPT AASLQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003708.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028960260.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_028960261.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_028960262.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_028960263.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_028960264.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_028960265.1	1e-134	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	2e-65	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A498JPH8	1e-132	A0A498JPH8_MALDO; Uncharacterized protein
STRING	XP_008341105.1	1e-145	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18826	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	7e-68	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]