PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003533.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 367aa    MW: 40146.2 Da    PI: 4.9418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003533.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.9e-102903301055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pbr003533.1 290 RKRREKINERLRVLQGLIPNG-----TKVDISTMLEEAVHYVKFLQ 330
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-13279344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12285339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11289334No hitNo description
PfamPF000105.6E-7290330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEHIEAVSEG EWPSLSGMYI AEEVDFMSQL LGNFSNQISS MGITPDAFCS GGNYEGSHYY  60
SSETSYSNSL EGNFSGGNRT FYPTSRSESY YLSESSHPML VTNNSKISMS IDFGAGDVIK  120
TLNSSLIEGD HDQCLNQERS DCNAEESGGN PAEDGALGNQ RFDMTAAKEQ SPEEINPTKN  180
PLKKSRSLEN VQMKKRNIKA KKRRQVTTSN NEEDGNAAGL NRQSYSCCSG DDQSNIVASH  240
SHENSQELSG GVSITSTSSL SPTEVAALNL SGKSRARRGS ATDPQSLYAR KRREKINERL  300
RVLQGLIPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD TWMYAPICYS GMDLGLDLKL  360
TTPQQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003533.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349168.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A498IW610.0A0A498IW61_MALDO; Uncharacterized protein
STRINGXP_009349168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-59ROOT HAIR DEFECTIVE 6-LIKE 2