PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 173aa MW: 19689.5 Da PI: 10.4353 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.2 | 2e-17 | 124 | 159 | 2 | 35 |
GATA 2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 + nC++tk+p+WR+gp g+k+LCn CG++yrk+++ Pbr003297.1 124 TnfNCRVTKSPMWRKGPLGPKSLCNRCGIRYRKMKM 159 5559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 8.55E-13 | 116 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.0E-13 | 118 | 169 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 3.2E-11 | 119 | 171 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-14 | 123 | 158 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.59E-8 | 126 | 154 | No hit | No description |
PROSITE profile | PS50114 | 10.501 | 127 | 172 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDFGGVHRSQ LMNFAPQNQF NMEGTGSGLD LTLRLGLSSN NHGGDHFRPY LNEALPRASN 60 QFWFNYTNPA VGTTSKAYNV PKPPKPDDYC DIDITNKTSR TGGSRKRNLT KVRTVKPDEN 120 LICTNFNCRV TKSPMWRKGP LGPKSLCNRC GIRYRKMKMK EEMEKKEREQ LR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003297.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349428.1 | 1e-126 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A498IP09 | 1e-106 | A0A498IP09_MALDO; Uncharacterized protein | ||||
STRING | XP_009349428.1 | 1e-125 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 2e-12 | GATA transcription factor 29 |