PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002913.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 334aa    MW: 37154.9 Da    PI: 7.0344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002913.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.7e-22149209259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg +WrKYGqK + ++ +pr+Y+rCt +   gC+++k+v++ +++p++ ++tY geH+++
  Pbr002913.1 149 EDGQAWRKYGQKIILKASYPRAYFRCTRKydqGCMATKQVQQIRDNPRTYQTTYIGEHTCR 209
                  89*************************998899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-21137209IPR003657WRKY domain
SuperFamilySSF1182902.48E-22146209IPR003657WRKY domain
SMARTSM007749.2E-34148210IPR003657WRKY domain
PROSITE profilePS5081119.795148206IPR003657WRKY domain
PfamPF031063.6E-22149209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGTNHKRLIE ELLEGRKTAV ELQSLLHKPF GDSGSAGGGF VEXXXXXXQK PFGDSGSAEE  60
LLMKIMKTFT ESLSVLTASD GHEDHQSAAS GEVYQVKPEP SHVEHSHCGD RSSEGSGESP  120
KTQAFKDRRG CYKRRKTSQS WKVISTKIED GQAWRKYGQK IILKASYPRA YFRCTRKYDQ  180
GCMATKQVQQ IRDNPRTYQT TYIGEHTCRT MIKASPTIIG PDPRRSQTVS SESGSPHRQN  240
PNFFGSSSSS IPIVKQEDSK VGTPSDVTDN NVWLGLKDHF GLSEPAGICV SSNENVVSNM  300
QWDDMDLVKS INFECDINFD EAEFPITPCN DRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-24143209369OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504555.10.0PREDICTED: probable WRKY transcription factor 70 isoform X1
TrEMBLA0A498JI370.0A0A498JI37_MALDO; Uncharacterized protein
STRINGXP_009363788.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-37WRKY DNA-binding protein 70