PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33591.1 Da PI: 9.1069 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.8 | 7.7e-48 | 1 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+kve++ +++ e ik++diyk++PwdLp k kv++ ++ke+yfF++r +ky+++ r+nr+t sg+Wkatg dk Pbr002372.1 1 MLPGFRFHPTDEELVGFYLKRKVEKRAISM-ELIKQIDIYKYDPWDLPsKtpqgsrKVSSlGDKECYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDK 97 579***************************.99**************95477776633335899********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s +e +glkk+Lv+y+g+a kg+ktdW+m+e+rl Pbr002372.1 98 AIYSVkdPHECIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 137 ***98555667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.366 | 1 | 171 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-50 | 2 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-24 | 3 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLPGFRFHPT DEELVGFYLK RKVEKRAISM ELIKQIDIYK YDPWDLPSKT PQGSRKVSSL 60 GDKECYFFCR RGRKYRNSIR PNRVTGSGFW KATGIDKAIY SVKDPHECIG LKKSLVYYRG 120 SAGKGTKTDW MMNEFRLPPN GHGKTTKFLN AKVDVTQEEA EVWTLCRIFK RIPSYKKYTP 180 DCKESTTKQN PTDSSSKTCS LESGSYCSEI HFGLKDSVIQ RIERPKPAHV DEANQWLVAV 240 GELDSISYPT PFSTTYSTLT NLSDGDLFTN GNWDELRPVV QLAVDPSSQV YDCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 3 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 3 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 3 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 3 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 3 | 177 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 3 | 177 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 3 | 177 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002372.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377103.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 6e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A498HF39 | 0.0 | A0A498HF39_MALDO; Uncharacterized protein | ||||
STRING | XP_009377103.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-85 | NAC domain containing protein 42 |