PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002338.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 420aa    MW: 44827.2 Da    PI: 7.1387
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002338.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.59.2e-21316378163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae++eL+ ++++L++eN +L++e+++++ e++ l se+
  Pbr002338.1 316 ERELKRQKRKQSNRESARRSRLRKQAECDELALRAEALKEENGTLRSEVNRIRSEYELLLSEN 378
                  89*******************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-54137273No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-16309374No hitNo description
PfamPF001702.4E-19316378IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-21316380IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61318381IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10319375No hitNo description
CDDcd147024.31E-23321371No hitNo description
PROSITE patternPS000360323338IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGSSEMDKPS KEKEKETKTT PASTQEQSAT TSAGAVNPEW SGFQAYSPIP PHGFMASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPHGG LYAHPSMPPG SYPFSPFAMP TPNGIVEASG  120
NTPGSMEADG KPSEVKDKLP IKRSKGSLGS LNMITGKNNE LGKTSGASAN GVYSKSAESA  180
SDGTSEGSDA NSQSDSQLKS GVRQDSLEGD VSQNGSSAHG SQNGAPNTHT MLNQTMAVMP  240
ITAAGAPGVV PGPATNLNIG MDYWGAPPSA AMPAMRGKVA TTPVSAXXXX XXXXXXXXXX  300
AGSRDSVQSQ LWLQDERELK RQKRKQSNRE SARRSRLRKQ AECDELALRA EALKEENGTL  360
RSEVNRIRSE YELLLSENAS LKERLGEIPG HEDVRSARSE PHLSNDTKQI AQTERHGGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338RRSRLRK
2332339RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002338.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9518770.0KC951877.1 Pyrus pyrifolia bZIP protein (bZIP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348483.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_009348484.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-170BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A498HHU90.0A0A498HHU9_MALDO; Uncharacterized protein
STRINGXP_009348483.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-154basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]