PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002143.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 274aa    MW: 30012.6 Da    PI: 5.9769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-20129179255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  Pbr002143.1 129 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEGAALAYDQAAFKMRG 179
                  69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-30128189No hitNo description
PfamPF008473.3E-14129179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-32129188IPR001471AP2/ERF domain
SMARTSM003808.0E-39129193IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22129188IPR016177DNA-binding domain
PROSITE profilePS5103223.749129187IPR001471AP2/ERF domain
PRINTSPR003675.7E-13130141IPR001471AP2/ERF domain
PRINTSPR003675.7E-13169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFEDIYLEAD FALLESIRQH LLDDNFDTNL QESSATASGS PPPMYCRSLS FSNLFLTKSW  60
SDMPFKVELE DTNDVVGALS DGTAGWSMLS DHHHVDVIET TPAKSEPQEV VREEIAVARE  120
TRTPLTGQHF RGVRRRPWGK YAAEIRDPKK NGARVWLGTY ETAEGAALAY DQAAFKMRGS  180
KAKLNFPHLI GSGCEPVRVT AKRRAPEVSS SSSSSDSGSP KLKRRNSGVG SGAEAKSGST  240
SRLEMVEMSQ LAVVDQWLSD LNTTVCSMPI NYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-32127193369ATERF1
3gcc_A4e-32127193369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002143.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341335.10.0PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_009341336.10.0PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_009348378.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404791e-55ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A498KM991e-176A0A498KM99_MALDO; Uncharacterized protein
STRINGXP_009341335.10.0(Pyrus x bretschneideri)
STRINGXP_009341336.10.0(Pyrus x bretschneideri)
STRINGXP_009348378.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-50ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]