PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002038.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 244aa    MW: 27893.4 Da    PI: 7.8211
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002038.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35231142102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF +++F+kg+k++l++i+
   Pbr002038.1  23 FLLKTYMLVEDPATDDVISWNDDGSAFVVWQTAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVSTNR---------WEFCNDKFRKGEKDQLCDIR 110
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr002038.1 111 RRKA 114
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3616106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.9E-3318112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5219112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGVCDDQKR LLEYVRKSSP PPFLLKTYML VEDPATDDVI SWNDDGSAFV VWQTAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVSTNR WEFCNDKFRK GEKDQLCDIR RRKAWATKQQ  120
PINNAVTQQA GAAVLLPNEF DEDQRSSSTS SSSEFSSLVD ENKRLKQENG VLSSELTSMK  180
RKCKELLDLV AKYGDSTEKE EEDNERVLKL FGVRLEVTGE RERKRKRAEI SATANVLLSQ  240
ACK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-23231124104Putative transcription factor
5d5x_B1e-23231124104Putative transcription factor
5d5x_E1e-23231124104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363199.11e-180PREDICTED: heat stress transcription factor B-3
SwissprotO222302e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A498I4731e-177A0A498I473_MALDO; Uncharacterized protein
STRINGXP_009363199.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-68heat shock transcription factor B3