PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001243.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 332aa    MW: 36692.8 Da    PI: 4.7644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001243.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.6e-23157217259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYG K++++ ++pr+Y+rCt++   gC+++k+v++ ++ p+v+ +tY g+H+++
  Pbr001243.1 157 DDGHAWRKYGNKVIHNEKHPRNYFRCTHKfdqGCKATKHVQQVQDHPSVLRTTYYGTHTCR 217
                  8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-24143217IPR003657WRKY domain
SuperFamilySSF1182901.1E-22149217IPR003657WRKY domain
PROSITE profilePS5081119.726151214IPR003657WRKY domain
SMARTSM007742.5E-31156218IPR003657WRKY domain
PfamPF031064.6E-23157217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEWSWSDSVL SNRERVMEEL IQGRELASQL STAYDNRSVV NGDDEGSAEG FVNTLLILNG  60
KESDQEFVSD QIQGNSSSVS GGGGSGVNDG GSVVSGGGAD LSSWDANHDH AAAIKSEDYT  120
EEEISCKSTS TFKDGRGSYK RRNTTDSWTR DTPGLIDDGH AWRKYGNKVI HNEKHPRNYF  180
RCTHKFDQGC KATKHVQQVQ DHPSVLRTTY YGTHTCRDYF KTSDLVLDCT NHRDSSMFIS  240
FDNANCLTNK QEHPFFASFA SSSVKEELIV KATSDHTLTS HDNQWLPSDY LVSPDDLMAF  300
KSSGPVSGFS SSIDQYDGDD DVFSRIIAEL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-22156217869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001243.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347820.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A498IFL80.0A0A498IFL8_MALDO; Uncharacterized protein
STRINGXP_009347820.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-25WRKY DNA-binding protein 70