PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000980.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 486aa    MW: 53201 Da    PI: 6.751
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000980.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17160209155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pbr000980.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209
                  78*******************......55************************997 PP
2AP2409.5e-13252302155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Pbr000980.1 252 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 302
                  79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9160209IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-15160218IPR016177DNA-binding domain
SMARTSM003802.0E-30161223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16161217IPR001471AP2/ERF domain
PROSITE profilePS5103217.385161217IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16252311IPR016177DNA-binding domain
PfamPF008472.0E-8252302IPR001471AP2/ERF domain
CDDcd000181.01E-24252312No hitNo description
SMARTSM003802.2E-31253316IPR001471AP2/ERF domain
PROSITE profilePS5103215.501253310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15253310IPR001471AP2/ERF domain
PRINTSPR003675.8E-6254265IPR001471AP2/ERF domain
PRINTSPR003675.8E-6292312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLDLNLNVVV SGPNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSTRA ARNDAVTTFN  60
FGILKVQGGD EEENDDVVVT KELFPVTGGL NNWSGQAHGH GQSSSSSLLV RKNLMELGFD  120
LGGSGEVRLV QQKQQQQPAA PPPQQQQAKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINYNLSD YEDDMKQMKN LTKEEFVHIL  240
RRQSTGFSRG SSRYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA RAYDKAAIKC  300
NGREAITNFE PSTYEGEMMS EAGNEDGNHN LDLNLGISPP SFSTGQKEGE GRLQFHSNPF  360
DVHNGKRMEH NVNVTMSDPP FRGLVMTPDH PPPLWNGVYP SYLPNQEGAT EKRLALGSQG  420
PPNWAWQMHG QVTPMPLFST AASSGFSFSA NAPAAAVHPL QPSNPTALNL CFALPATALT  480
HTTQQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347681.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_009352422.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-113RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A498IJL30.0A0A498IJL3_MALDO; Uncharacterized protein
STRINGXP_009347681.10.0(Pyrus x bretschneideri)
STRINGXP_009352422.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-116related to AP2.7