PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000900.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 291aa MW: 31572.5 Da PI: 9.0065

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000900.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pbr000900.1 47 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	3.5E-25	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKPQSS QELANVGAVS GGSSVKSPTP SGGGSGKQRL RWTSDLHDRF 60 VDAITQLGGP DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKDEKKGS 120 GDSLSCSDSS PGVQINEALR MQMEVQKRLH EQLEVQRQLQ MRIEAQGKYL QKIIEEQQKF 180 GGSLKASEAL PSAEEKQKPA QLETMGDASA APSSPRKKQR VDEGLPDGCT TSNLPLKADQ 240 KNEFVGQWDR DMYGNDGGYG FGLQTEYKER DGSAAQKAPM ELDPLCGSKQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000900.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009345372.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_009347649.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_009347650.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	2e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A498IFZ3	0.0	A0A498IFZ3_MALDO; Uncharacterized protein
STRING	XP_009345372.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009347649.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009347650.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-69	G2-like family protein