PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000622.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 417aa    MW: 45237.9 Da    PI: 6.239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000622.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11351396655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k    +++L +AveYIk+Lq
  Pbr000622.1 351 SIAERVRRTRISERMRKLQELVPNM----DKQAHTSDMLDLAVEYIKDLQ 396
                  689*********************7....5779999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.202345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15348408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-12349400No hitNo description
Gene3DG3DSA:4.10.280.108.6E-15350407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MESDHQQHHD KPQQHMNSSL TRYRSAPSSY FTNILDSELC EPLFNRPSSP ETERIFARFL  60
ASEGGGDGGG GGGGGTEEIA SQHKVETQIN NQQPQFMVPK VDDEVGMIQQ QQQQQSNLNN  120
YSSVAQGFYQ PTSKPPLPNQ NLNEGAYSMG GSHLPSVKTG GGVANSNLIR HSSSPAELFS  180
NMNIDAAGYA ALRGMGNFGA SNSTSEEASF SSASRLKNFS SGPPSTSGLM GPIAEIGNKR  240
MRSNSQDAGG FGDGRGNNYV TGFPMDSWDD SAILGDDTGF RDDEVKAYTG LSPSETQDVE  300
AGNHPPTLLA HHLSLPKTSA EMAAIEKFLQ FQDSVPCKIR AKRGCATHPR SIAERVRRTR  360
ISERMRKLQE LVPNMDKQAH TSDMLDLAVE YIKDLQTQVQ TLSENRAKCT CSNKQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374647.10.0PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_009374656.10.0PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_009374663.10.0PREDICTED: transcription factor bHLH122-like isoform X1
TrEMBLA0A498K8N10.0A0A498K8N1_MALDO; Uncharacterized protein
STRINGXP_009374647.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.19e-68bHLH family protein