PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LSD | ||||||||
Protein Properties | Length: 123aa MW: 13260.1 Da PI: 6.9682 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.4 | 5.7e-14 | 33 | 57 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V C++C+tV Pbr000358.1 33 CGSCRRLLKYPRGATHVECSCCQTV 57 ************************9 PP | |||||||
2 | zf-LSD1 | 48 | 2.1e-15 | 71 | 95 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GApsVRC++C++V Pbr000358.1 71 CGSCAVLLMYPYGAPSVRCSSCHFV 95 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.3E-18 | 30 | 60 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-11 | 33 | 57 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.9E-12 | 68 | 97 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.5E-13 | 71 | 95 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MESKVEVDEA PQPELQSIAA QPSPPSEIAQ MVCGSCRRLL KYPRGATHVE CSCCQTVNFV 60 LEAHQVGQVK CGSCAVLLMY PYGAPSVRCS SCHFVTEVGE HNKRPPWSVQ QGQSPTPPNP 120 VH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000358.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338990.1 | 5e-85 | PREDICTED: protein LOL2-like isoform X1 | ||||
Swissprot | O65426 | 4e-43 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A498K1H3 | 1e-79 | A0A498K1H3_MALDO; Uncharacterized protein | ||||
STRING | XP_009338990.1 | 2e-84 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-45 | lsd one like 2 |