PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000225.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 146aa    MW: 16277.6 Da    PI: 4.2355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000225.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-054213855
                 STCHHHHHHHHHHHHHHH CS
          HLH 38 lsKaeiLekAveYIksLq 55
                 ++Ka+i+e A+ YI++Lq
  Pbr000225.1  4 MNKATIVEDAITYIQELQ 21
                 69***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-5337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-8336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MFQMNKATIV EDAITYIQEL QQKVNLLKDQ IFEMEASSEE TMDPNTEETH ADAAEEMKKF  60
GIQTEVNVTK IDGNKLWVKA VLEKKRGGFT KLMGAMSAFG FELTDTSITT SSGAMMVSSC  120
VTRFSCETLE AEQTRELMLE IINDI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272016e-58AB627201.1 Malus x domestica mRNA, microsatellite: MEST023, clone: SAM01_42_D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505556.11e-93PREDICTED: transcription factor DYT1
TrEMBLA0A314YUK44e-66A0A314YUK4_PRUYE; Transcription factor DYT1
STRINGXP_009368958.12e-96(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-32bHLH family protein