PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000021.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 417aa    MW: 46736.4 Da    PI: 6.2215
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000021.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.87.1e-24266351186
     trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev+aLi++    e+++  +g  k+  Wee+s km e g+ rs  +C+ekwen+nk+++++   ++kr s + + cpyf++le
  Pbr000021.1 266 RWPEAEVQALITLWAAFEHKFHvAGTPKGRIWEEISVKMGEMGYVRSGRKCREKWENINKYFRRCMGPDSKR-SANAKLCPYFHELE 351
                  8*********************558999******************************************98.67778*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.108259324IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4260323IPR009057Homeodomain-like
CDDcd122034.26E-18265330No hitNo description
PfamPF138371.8E-18265351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAELTGGRHL PNSDAFGEQI SPFPESTYDL VFENPTPAVP SPPQKLRPVR GGGGRSPMDS  60
GGKLEDVGPA KVGSGDELED ESSSSADDDD DRDKCLKAQG EEPMKRKRKT NVRTGNRLEI  120
ERVELFLESL VKKVMEQQEQ MHKQLIEVIE KNEQERLARE EAWKQQVLDR LKRDKEIRAQ  180
ETSRSLALIS FIQNYLGSEN QVPQPSPSPS PVPEQAPAPA PAPAPAPIPL SVVPNYDLQR  240
MEGNGKADNG MQRDLMLVSS DATNRRWPEA EVQALITLWA AFEHKFHVAG TPKGRIWEEI  300
SVKMGEMGYV RSGRKCREKW ENINKYFRRC MGPDSKRSAN AKLCPYFHEL ELLHKSGLVS  360
FGNGFNRTSN QNEAKIEKQE QKSEKRSDDG IQTSPAFDNG DASEGKFHRE RERGMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369197.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A498JZQ90.0A0A498JZQ9_MALDO; Uncharacterized protein
STRINGXP_009369197.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-35Trihelix family protein