PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf47032g00004.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YC

Protein Properties

Length: 279aa MW: 30589.7 Da PI: 4.6957

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf47032g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.8	4.7e-13	1	85	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia.aavtrt.........difdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ + + vt++ ++fdfl d+v r Peaxi162Scf47032g00004.1 1 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHFSgNHVTQSlyftgnnsfNVFDFLKDVVSR 85 7******************************************999999998755432233333111122223578999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-19	1	55	IPR009072	Histone-fold
Pfam	PF00808	2.4E-13	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.79E-12	7	86	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCDRTY EITLKKGAKT MNSFHFSGNH 60 VTQSLYFTGN NSFNVFDFLK DVVSRVPDLG GSDAGAEAAA KRRKIAEDDH GSDDDIKRSH 120 MDETAHTSGS GRGRGRGRGR GRGRGARALE RGDSNVRCEK LEDPADVSHQ NNEKQKQNDE 180 SMDHVAEPPA DSKNISAGRS PEGPARNFDL NIDLNESVET TAIPVEAPSS STIQPPEVKH 240 EEIPGWSLSE MEKMAIDPIQ LASLNKGLDE EEEDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-14	1	74	15	83	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244600	1e-38	AC244600.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence.
GenBank	HG975450	1e-38	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	1e-38	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797323.1	1e-130	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A1U7Y2F6	1e-128	A0A1U7Y2F6_NICSY; dr1-associated corepressor-like isoform X1
STRING	XP_009607736.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	7e-38	NF-YC family protein