PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01464g00024.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 281aa    MW: 32166.8 Da    PI: 6.6463
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01464g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W+++Ed++l +++  +G g+W++++   g+ R +k+c++rw +yl
  Peaxi162Scf01464g00024.1 15 KGLWSPDEDDKLRNYIINHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                              678*******************************************97 PP
2Myb_DNA-binding54.42.9e-1768113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE++ ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
  Peaxi162Scf01464g00024.1  68 RGAFSLEEEDTILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113
                               89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.381062IPR017930Myb domain
SuperFamilySSF466891.76E-2813109IPR009057Homeodomain-like
SMARTSM007171.9E-101464IPR001005SANT/Myb domain
PfamPF002496.0E-131562IPR001005SANT/Myb domain
CDDcd001671.22E-81862No hitNo description
PROSITE profilePS5129426.8363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2666117IPR009057Homeodomain-like
SMARTSM007173.2E-1667115IPR001005SANT/Myb domain
PfamPF002493.1E-1668113IPR001005SANT/Myb domain
CDDcd001674.65E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGCKIVEKTK QKHKKGLWSP DEDDKLRNYI INHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSLEEEDTIL TLHAMFGNKW SQIAQHLPGR TDNEIKNHWH SYLKKRVAKN  120
AENESQTQSG NRESLLFSKK WTPQNSSLDS FEHIEGSLAD SDQSGSQVDF PKEHQKSNLP  180
KVLFAEWLCL DKFHGQDFQN SGTFDLTKNN FGYNNSESQH AFMHGLLMNE GSYGSCMNQE  240
VNNGTVDDMF QPQLKFEDSM SANGFEDFMS GEFINTDVMY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-41HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755156e-41HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629823.11e-168PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1U8G9M01e-162A0A1U8G9M0_CAPAN; Transcription factor MYB46
TrEMBLA0A2G2Z0U61e-162A0A2G2Z0U6_CAPAN; transcription factor LAF1-like
TrEMBLA0A2G3CW611e-162A0A2G3CW61_CAPCH; Transcription factor MYB46
STRINGXP_009629823.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-63myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]