PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01390g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 117aa MW: 13608.8 Da PI: 9.2182 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 135.4 | 6.1e-42 | 1 | 116 | 258 | 374 |
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 +eal+yysa+fdsl++ lp+ + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ +++qak l+ Peaxi162Scf01390g00007.1 1 MEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLA 83 69*********************************************************************96..79******** PP GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 kv+ +g+++ ee+g+lvlgWk++p+v++S+W+ Peaxi162Scf01390g00007.1 84 KVNaYEGFTITEEKGCLVLGWKSKPIVAASCWK 116 ********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.1E-39 | 1 | 116 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 18.143 | 1 | 97 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MEALHYYSAI FDSLDVMLPK YDTRRAKIEQ FYFAEEIKNI VSCEGPARVE RHERVDQWRR 60 RMSRAGFQAA PIKMVSQAKQ WLAKVNAYEG FTITEEKGCL VLGWKSKPIV AASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-16 | 1 | 115 | 264 | 378 | Protein SCARECROW |
5b3h_A | 2e-16 | 1 | 115 | 263 | 377 | Protein SCARECROW |
5b3h_D | 2e-16 | 1 | 115 | 263 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-132 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769411.1 | 7e-81 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016495537.1 | 7e-81 | PREDICTED: DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 1e-38 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | M1B8B1 | 9e-81 | M1B8B1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039455 | 2e-81 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 5e-32 | GRAS family protein |
Publications ? help Back to Top | |||
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