PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01294g00031.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 443aa    MW: 48588.9 Da    PI: 6.697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01294g00031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20220269255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Peaxi162Scf01294g00031.1 220 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 269
                               7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712220277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-33220278IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22220278IPR016177DNA-binding domain
PfamPF008473.9E-14220269IPR001471AP2/ERF domain
SMARTSM003806.3E-37220283IPR001471AP2/ERF domain
CDDcd000181.04E-20220279No hitNo description
PRINTSPR003671.3E-11221232IPR001471AP2/ERF domain
PRINTSPR003671.3E-11243259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
WLHVLYKVAN SRKPSEYGRV ADTEDTETTT TTTTTTATVS TATEGGGQPY DQSNQFFEEL  60
IQQQIQQEAD YLLSSYSSSA MPMFSGYSQT REMTAMVSAL THVVSGQNYR PDIGGGGGGS  120
GVYLANSPSS AYSSSSSGSR AGQKRSRDQE ESVSQISEQR VYGGFGEFRK EATSMVAPSN  180
TTISTITTVP PFTTTTTTAE VATTTTAAGS SEETGERKRR YRGVRQRPWG KWAAEIRDPH  240
KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RLLPQLQQTS QQPITTRLAT  300
SSSTSTSQYP FIPPISQPTT YFQQQQQQQP MQSSEMTRDY WEYSQLLQNP GDFSSQQQQQ  360
PSSLLEQMFF ASSMAVLHSN TYPSSSLATS AASSTSYPLL FSGQQSSYYR PQTNQNQGTS  420
SSSTSNFSAP FWTSSSHYPP SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23219280163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754517e-54HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229916.11e-146PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_019229917.11e-146PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A314KM121e-144A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009792227.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-22ethylene response factor 110