PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01231g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 217aa MW: 24863.4 Da PI: 4.8638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.5e-12 | 114 | 171 | 32 | 90 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++++ ++ + gr+W +kl+ ++ksgr l kGW +Fv an+Lk gD v F+l++++ + Peaxi162Scf01231g00027.1 114 CEMKRVVVKLGGRQWYMKLS-TGKSGRKKLNKGWVDFVVANNLKIGDHVNFQLVESNAK 171 6778889999*********5.88888899***********************9865443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-13 | 67 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-13 | 69 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.92E-11 | 72 | 180 | No hit | No description |
SMART | SM01019 | 4.0E-5 | 74 | 179 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-10 | 114 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.011 | 125 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAQLFALIEQ IVFQPQLSKR SLMEGPTCLN GYGNCSEQSL SLTTKVAKEK SILRASMAYG 60 NEESTPIDDS KRFFDSILSK SYIERDDFIP PLKIRQHLPV TEMLLSDVWR FLPCEMKRVV 120 VKLGGRQWYM KLSTGKSGRK KLNKGWVDFV VANNLKIGDH VNFQLVESNA KVVKFEFTMF 180 GHPDPDELEF SMSDSDDEPD NLPQVDEETP DDLVWLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 7e-06 | B3 family protein |