PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01198g00214.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 277aa    MW: 31983.1 Da    PI: 8.6916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01198g00214.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.1e-141912681596
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                +++p +fa+  g++    k +tl +e g++W+v l  +  +g   l++GW+ F k n+++ gD+++Fkl++r++++ v++v
  Peaxi162Scf01198g00214.1 191 AMTIPMSFARWTGIIDM--KRVTLVNEIGQEWRVDL--THFGGCLHLRGGWSAFRKYNNICYGDTCLFKLIRRHGGSNVLQV 268
                               589******99988854..47***************..66666688*************************99888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-155103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-146102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-89101No hitNo description
PfamPF023621.1E-711101IPR003340B3 DNA binding domain
SMARTSM010190.002711104IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50524104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16174269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18174260IPR015300DNA-binding pseudobarrel domain
CDDcd100177.97E-9178261No hitNo description
SMARTSM010191.6E-8180274IPR003340B3 DNA binding domain
PfamPF023624.6E-11191267IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237192272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQVDPNKHPS FCKLLFKEGF MKKMLMPHSF VKKHKKMLAK TCLLKTNAAE MLWEAKIVKE  60
NSYYFICEGE WPQFVMQNKL ELGDILLFFL IDKSMFNVLV YTQKSYKSFC GGQLYEELSS  120
SSEEQEDSYI GPSRKSKKAK TEPKESSVVA EDEAKSEEEE NGQKKTRFSM AGLDNEDPCY  180
ELVIKKSHLY AMTIPMSFAR WTGIIDMKRV TLVNEIGQEW RVDLTHFGGC LHLRGGWSAF  240
RKYNNICYGD TCLFKLIRRH GGSNVLQVEK VPKSNSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622139.21e-109PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBLA0A1S3Z1H21e-100A0A1S3Z1H2_TOBAC; putative B3 domain-containing protein At5g66980
STRINGXP_009780425.16e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-14B3 family protein