PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01175g00018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 343aa    MW: 37761.3 Da    PI: 5.6845
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01175g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18242275134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Peaxi162Scf01175g00018.1 242 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 275
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.5E-724329IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.411236272IPR000679Zinc finger, GATA-type
SMARTSM004016.8E-17236286IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-15240273IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-15240299No hitNo description
CDDcd002023.80E-15241288No hitNo description
PfamPF003205.4E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGSNLVDENY EIDCGSFFDH IDDLIEFPLE NECGGDLTST DRKDFPSIWN DPLPDTDSIF  60
SGSHYNSASD MSTELDLSTE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENIPLNKEP  120
LQAKFQTSSP VSVLESSSSS STSSCSGEKI VPLSSPCHRG PQRARTKRPR PATFNPPPVI  180
QQPFVAQGLA SESENFAESP IKKNLHPVAA SEQKKKKKIK MSFPLALIET NQNPTSQTVR  240
KCQHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SLHSNSHKKV  300
IEMRTKVVPD ITTTTVSRTA SPATAIQAEF NPSNKESLDE EYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503811.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016503812.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016503813.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4CRV81e-180A0A1S4CRV8_TOBAC; GATA transcription factor
STRINGXP_009598426.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein