PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01160g00124.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 529aa    MW: 60319.3 Da    PI: 4.9588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01160g00124.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.91.6e-821555161359
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl 83 
                               lve Ll+ Ae v ++++ +a++lL +  +l+s++g+p++Rl+ yft+AL++r+ r +++++ k l  +  ++ +   ++++  ++
  Peaxi162Scf01160g00124.1 155 LVECLLASAEKVGEKQFDRATKLLDECDKLSSKTGNPVERLIYYFTRALRERVDReTGKNCTKGLWINGLQDLQeALRSINPCTI 239
                               5789***************************************************889999999966665543326677777778 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesgskeeleetger 164
                                ++  P+ +++ ++  qaI+e v +++++HiiD++i++G+QW  L+qaLa+ +  +++p  +l+iT+++  +++s+  +e tg+r
  Peaxi162Scf01160g00124.1 240 AVHDMPLCQVTKFAGIQAIVENVGNSKKIHIIDLEIKMGGQWTILMQALATHQqeSQSPieHLKITALVLGTPQSRPLIEDTGKR 324
                               9999**********************************************88866444456*********9999*********** PP

                      GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L++fAe+++ +f f++++++++ dl+ e+L+++p+E++aV + + l ++  ++ +     d ++ ++k ++P+++++ e ea+hn
  Peaxi162Scf01160g00124.1 325 LRSFAESFNFSFTFKIVMVENVLDLKKEDLDLDPEEVIAVYSLYFLTNIIMQQDK----LDFLMGFIKAMNPRIMIIGEIEANHN 405
                               *************************************************944444....566*********************** PP

                      GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                               s+ F++rf+eal y+ a+fd +e  + +++++r+++E e++ + i+n+va+eg+er+ rh t   Wr  ++++ +++++ls++  
  Peaxi162Scf01160g00124.1 406 SPVFVNRFIEALFYHGAFFDLFEDCMKNDESNRMSIESEVMWQGIRNIVAAEGDERTIRHVTIDLWRVYFKRFRMEEMKLSNSSL 490
                               ************************************************************************************* PP

                      GRAS 335 kqaklllrkvk.sdgyrveeesgslv 359
                                qak++l+k++ ++ +++e + ++l+
  Peaxi162Scf01160g00124.1 491 YQAKMVLEKFSvGKSFTLEMNGNCLL 516
                               ***********9999******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.856129510IPR005202Transcription factor GRAS
PfamPF035145.6E-80155516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEPALGISWL STALELHQED KEDIIDKKEV PSAADFVDFD DWDFDVVDET KQVLYIPYDK  60
KKESPMINSL NILKDFGNGF RKLKGQKITI KTSESECTPK SVCKLPTDAI LRLAGQKFIQ  120
SSEQSVQESS ISTLDHPFVS CLMSLSEDDL KSVTLVECLL ASAEKVGEKQ FDRATKLLDE  180
CDKLSSKTGN PVERLIYYFT RALRERVDRE TGKNCTKGLW INGLQDLQEA LRSINPCTIA  240
VHDMPLCQVT KFAGIQAIVE NVGNSKKIHI IDLEIKMGGQ WTILMQALAT HQQESQSPIE  300
HLKITALVLG TPQSRPLIED TGKRLRSFAE SFNFSFTFKI VMVENVLDLK KEDLDLDPEE  360
VIAVYSLYFL TNIIMQQDKL DFLMGFIKAM NPRIMIIGEI EANHNSPVFV NRFIEALFYH  420
GAFFDLFEDC MKNDESNRMS IESEVMWQGI RNIVAAEGDE RTIRHVTIDL WRVYFKRFRM  480
EEMKLSNSSL YQAKMVLEKF SVGKSFTLEM NGNCLLRLEG SSDNYSGHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-381545087351GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237374.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S4BHG30.0A0A1S4BHG3_TOBAC; DELLA protein RGL1-like
STRINGXP_009602534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-44RGA-like 2